diff options
Diffstat (limited to 'test/schema/test_serialize.py')
| -rw-r--r-- | test/schema/test_serialize.py | 335 |
1 files changed, 179 insertions, 156 deletions
diff --git a/test/schema/test_serialize.py b/test/schema/test_serialize.py index 84512e9..7d5d3ae 100644 --- a/test/schema/test_serialize.py +++ b/test/schema/test_serialize.py @@ -14,6 +14,8 @@ from bsfs.schema.serialize import from_string, to_string ## code ## +ns.bse = ns.bsfs.Entity() + class TestFromString(unittest.TestCase): def test_empty(self): @@ -25,7 +27,7 @@ class TestFromString(unittest.TestCase): # must not have circular dependencies self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> - prefix bsfs: <http://bsfs.ai/schema/> + prefix bsfs: <https://schema.bsfs.io/core/> bsfs:Entity rdfs:subClassOf bsfs:Node . # ah, a nice circular dependency bsfs:Entity rdfs:subClassOf bsfs:Document . @@ -39,8 +41,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> xsd:string rdfs:subClassOf bsfs:Literal . @@ -54,7 +56,7 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> + prefix bsfs: <https://schema.bsfs.io/core/> bsfs:Entity rdfs:subClassOf bsfs:Node . bsfs:Document rdfs:subClassOf bsfs:Node . @@ -66,8 +68,8 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema({}, {n_unused}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:unused rdfs:subClassOf bsfs:Node . # unused symbol ''')) @@ -80,8 +82,8 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema({}, {n_ent, n_tag, n_doc, n_image}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> # nodes inherit from same parent bsfs:Entity rdfs:subClassOf bsfs:Node . @@ -100,8 +102,8 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema({p_filename}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . xsd:string rdfs:subClassOf bsfs:Literal . @@ -116,7 +118,7 @@ class TestFromString(unittest.TestCase): self.assertDictEqual(from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> + prefix bsfs: <https://schema.bsfs.io/core/> bsfs:Entity rdfs:subClassOf bsfs:Node . @@ -124,7 +126,7 @@ class TestFromString(unittest.TestCase): self.assertDictEqual(from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> + prefix bsfs: <https://schema.bsfs.io/core/> bsfs:Entity rdfs:subClassOf bsfs:Node ; rdfs:label "hello world"^^xsd:string ; @@ -141,8 +143,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . @@ -156,7 +158,7 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> + prefix bsfs: <https://schema.bsfs.io/core/> xsd:string rdfs:subClassOf bsfs:Literal . xsd:name rdfs:subClassOf bsfs:Literal . @@ -168,8 +170,8 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema({}, {}, {l_unused}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> xsd:unused rdfs:subClassOf bsfs:Literal . # unused symbol ''')) @@ -182,13 +184,14 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema({}, {}, {l_string, l_integer, l_unsigned, l_signed}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> + prefix bsl: <https://schema.bsfs.io/core/Literal/> # literals inherit from same parent xsd:string rdfs:subClassOf bsfs:Literal . - bsfs:Number rdfs:subClassOf bsfs:Literal . - xsd:integer rdfs:subClassOf bsfs:Number . + bsl:Number rdfs:subClassOf bsfs:Literal . + xsd:integer rdfs:subClassOf bsl:Number . # literals inherit from same parent xsd:unsigned rdfs:subClassOf xsd:integer . @@ -203,8 +206,8 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema({p_filename}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . xsd:string rdfs:subClassOf bsfs:Literal . @@ -219,7 +222,7 @@ class TestFromString(unittest.TestCase): self.assertDictEqual(from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> + prefix bsfs: <https://schema.bsfs.io/core/> xsd:string rdfs:subClassOf bsfs:Literal . @@ -227,7 +230,7 @@ class TestFromString(unittest.TestCase): self.assertDictEqual(from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> + prefix bsfs: <https://schema.bsfs.io/core/> xsd:string rdfs:subClassOf bsfs:Literal ; rdfs:label "hello world"^^xsd:string ; @@ -244,8 +247,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> xsd:string rdfs:subClassOf bsfs:Literal . @@ -258,8 +261,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Literal . xsd:string rdfs:subClassOf bsfs:Literal . @@ -274,8 +277,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . @@ -288,8 +291,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . @@ -302,8 +305,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . @@ -320,8 +323,8 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema({p_comment}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . xsd:string rdfs:subClassOf bsfs:Literal . @@ -340,8 +343,8 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema({p_comment}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . xsd:string rdfs:subClassOf bsfs:Literal . @@ -362,8 +365,8 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema({p_comment}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . xsd:string rdfs:subClassOf bsfs:Literal . @@ -383,8 +386,8 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema({p_foo}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . @@ -405,8 +408,8 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema({p_foobar}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . bsfs:Image rdfs:subClassOf bsfs:Entity . @@ -421,8 +424,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . bsfs:Image rdfs:subClassOf bsfs:Entity . @@ -444,8 +447,8 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema({p_foobar}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . bsfs:Image rdfs:subClassOf bsfs:Entity . @@ -460,8 +463,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . bsfs:Image rdfs:subClassOf bsfs:Entity . @@ -478,8 +481,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . bsfs:Annotation rdfs:subClassOf bsfs:Predicate . @@ -499,8 +502,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . @@ -516,8 +519,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . @@ -533,8 +536,8 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bsfs:Entity rdfs:subClassOf bsfs:Node . @@ -551,8 +554,8 @@ class TestFromString(unittest.TestCase): self.assertDictEqual(from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bse:comment rdfs:subClassOf bsfs:Predicate ; rdfs:range bsfs:Node . @@ -561,8 +564,8 @@ class TestFromString(unittest.TestCase): self.assertDictEqual(from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> bse:comment rdfs:subClassOf bsfs:Predicate ; rdfs:range bsfs:Node ; @@ -581,70 +584,78 @@ class TestFromString(unittest.TestCase): self.assertEqual(Schema(literals={f_colors}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> + prefix bsl: <https://schema.bsfs.io/core/Literal/> + prefix bsa: <https://schema.bsfs.io/core/Literal/Array/> - bsfs:Array rdfs:subClassOf bsfs:Literal . - bsfs:Feature rdfs:subClassOf bsfs:Array. + bsl:Array rdfs:subClassOf bsfs:Literal . + bsa:Feature rdfs:subClassOf bsl:Array. - bsfs:Colors rdfs:subClassOf bsfs:Feature . + bsfs:Colors rdfs:subClassOf bsa:Feature . ''')) # features inherit properties from parents - f_colors = types.ROOT_FEATURE.child(ns.bsfs.Colors, dimension=1234, dtype=ns.bsfs.i32) - f_main_colors = f_colors.child(ns.bsfs.MainColor, distance=ns.bsfs.cosine, dtype=ns.bsfs.f16) + f_colors = types.ROOT_FEATURE.child(ns.bsfs.Colors, dimension=1234, dtype=ns.bsfs.dtype().i32) + f_main_colors = f_colors.child(ns.bsfs.MainColor, distance=ns.bsfs.cosine, dtype=ns.bsfs.dtype().f16) self.assertEqual(Schema(literals={f_colors, f_main_colors}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> + prefix bsl: <https://schema.bsfs.io/core/Literal/> + prefix bsa: <https://schema.bsfs.io/core/Literal/Array/> - bsfs:Array rdfs:subClassOf bsfs:Literal . - bsfs:Feature rdfs:subClassOf bsfs:Array. + bsl:Array rdfs:subClassOf bsfs:Literal . + bsa:Feature rdfs:subClassOf bsl:Array. - bsfs:Colors rdfs:subClassOf bsfs:Feature ; # inherits distance from bsfs:Feature - bsfs:dimension "1234"^^xsd:integer ; # overwrites bsfs:Feature - bsfs:dtype bsfs:i32 . # overwrites bsfs:Feature + bsfs:Colors rdfs:subClassOf bsa:Feature ; # inherits distance from bsa:Feature + bsfs:dimension "1234"^^xsd:integer ; # overwrites bsa:Feature + bsfs:dtype <https://schema.bsfs.io/core/dtype#i32> . # overwrites bsa:Feature bsfs:MainColor rdfs:subClassOf bsfs:Colors ; # inherits dimension from bsfs:Colors - bsfs:distance bsfs:cosine ; # overwrites bsfs:Feature - bsfs:dtype bsfs:f16 . # overwrites bsfs:Colors + bsfs:distance bsfs:cosine ; # overwrites bsa:Feature + bsfs:dtype <https://schema.bsfs.io/core/dtype#f16> . # overwrites bsfs:Colors ''')) # feature definition can be split across multiple statements. # statements can be repeated - f_colors = types.ROOT_FEATURE.child(ns.bsfs.Colors, dimension=1234, dtype=ns.bsfs.f32) + f_colors = types.ROOT_FEATURE.child(ns.bsfs.Colors, dimension=1234, dtype=ns.bsfs.dtype().f32) self.assertEqual(Schema(literals={f_colors}), from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> + prefix bsl: <https://schema.bsfs.io/core/Literal/> + prefix bsa: <https://schema.bsfs.io/core/Literal/Array/> - bsfs:Array rdfs:subClassOf bsfs:Literal . - bsfs:Feature rdfs:subClassOf bsfs:Array. + bsl:Array rdfs:subClassOf bsfs:Literal . + bsa:Feature rdfs:subClassOf bsl:Array. - bsfs:Colors rdfs:subClassOf bsfs:Feature ; + bsfs:Colors rdfs:subClassOf bsa:Feature ; bsfs:dimension "1234"^^xsd:integer . - bsfs:Colors rdfs:subClassOf bsfs:Feature ; + bsfs:Colors rdfs:subClassOf bsa:Feature ; bsfs:dimension "1234"^^xsd:integer ; # non-conflicting repetition - bsfs:dtype bsfs:f32 . + bsfs:dtype <https://schema.bsfs.io/core/dtype#f32> . ''')) # cannot define the same feature from multiple parents self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> + prefix bsl: <https://schema.bsfs.io/core/Literal/> + prefix bsa: <https://schema.bsfs.io/core/Literal/Array/> - bsfs:Array rdfs:subClassOf bsfs:Literal . - bsfs:Feature rdfs:subClassOf bsfs:Array. - bsfs:ColorSpace rdfs:subClassOf bsfs:Feature . + bsl:Array rdfs:subClassOf bsfs:Literal . + bsa:Feature rdfs:subClassOf bsl:Array. + bsfs:ColorSpace rdfs:subClassOf bsa:Feature . - bsfs:Colors rdfs:subClassOf bsfs:Feature . + bsfs:Colors rdfs:subClassOf bsa:Feature . bsfs:Colors rdfs:subClassOf bsfs:ColorSpace . ''') @@ -652,16 +663,18 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> + prefix bsl: <https://schema.bsfs.io/core/Literal/> + prefix bsa: <https://schema.bsfs.io/core/Literal/Array/> - bsfs:Array rdfs:subClassOf bsfs:Literal . - bsfs:Feature rdfs:subClassOf bsfs:Array. + bsl:Array rdfs:subClassOf bsfs:Literal . + bsa:Feature rdfs:subClassOf bsl:Array. - bsfs:Colors rdfs:subClassOf bsfs:Feature ; + bsfs:Colors rdfs:subClassOf bsa:Feature ; bsfs:dimension "1234"^^xsd:integer . - bsfs:Colors rdfs:subClassOf bsfs:Feature ; + bsfs:Colors rdfs:subClassOf bsa:Feature ; bsfs:dimension "4321"^^xsd:integer . # conflicting dimension ''') @@ -669,32 +682,36 @@ class TestFromString(unittest.TestCase): self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> + prefix bsl: <https://schema.bsfs.io/core/Literal/> + prefix bsa: <https://schema.bsfs.io/core/Literal/Array/> - bsfs:Array rdfs:subClassOf bsfs:Literal . - bsfs:Feature rdfs:subClassOf bsfs:Array. + bsl:Array rdfs:subClassOf bsfs:Literal . + bsa:Feature rdfs:subClassOf bsl:Array. - bsfs:Colors rdfs:subClassOf bsfs:Feature ; - bsfs:dtype bsfs:f32 . + bsfs:Colors rdfs:subClassOf bsa:Feature ; + bsfs:dtype <https://schema.bsfs.io/core/dtype#i32> . - bsfs:Colors rdfs:subClassOf bsfs:Feature ; - bsfs:dtype bsfs:f16 . # conflicting dtype + bsfs:Colors rdfs:subClassOf bsa:Feature ; + bsfs:dtype <https://schema.bsfs.io/core/dtype#f16> . # conflicting dtype ''') # cannot assign multiple conflicting distance metrics to the same feature self.assertRaises(errors.ConsistencyError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> + prefix bsl: <https://schema.bsfs.io/core/Literal/> + prefix bsa: <https://schema.bsfs.io/core/Literal/Array/> - bsfs:Array rdfs:subClassOf bsfs:Literal . - bsfs:Feature rdfs:subClassOf bsfs:Array. + bsl:Array rdfs:subClassOf bsfs:Literal . + bsa:Feature rdfs:subClassOf bsl:Array. - bsfs:Colors rdfs:subClassOf bsfs:Feature ; + bsfs:Colors rdfs:subClassOf bsa:Feature ; bsfs:distance bsfs:euclidean . - bsfs:Colors rdfs:subClassOf bsfs:Feature ; + bsfs:Colors rdfs:subClassOf bsa:Feature ; bsfs:distance bsfs:cosine . # conflicting distance ''') @@ -702,26 +719,30 @@ class TestFromString(unittest.TestCase): self.assertDictEqual(from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> + prefix bsl: <https://schema.bsfs.io/core/Literal/> + prefix bsa: <https://schema.bsfs.io/core/Literal/Array/> - bsfs:Array rdfs:subClassOf bsfs:Literal . - bsfs:Feature rdfs:subClassOf bsfs:Array. + bsl:Array rdfs:subClassOf bsfs:Literal . + bsa:Feature rdfs:subClassOf bsl:Array. - bsfs:Colors rdfs:subClassOf bsfs:Feature ; + bsfs:Colors rdfs:subClassOf bsa:Feature ; bsfs:dimension "1234"^^xsd:integer . ''').literal(ns.bsfs.Colors).annotations, {}) self.assertDictEqual(from_string(''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix xsd: <http://www.w3.org/2001/XMLSchema#> - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> + prefix bsl: <https://schema.bsfs.io/core/Literal/> + prefix bsa: <https://schema.bsfs.io/core/Literal/Array/> - bsfs:Array rdfs:subClassOf bsfs:Literal . - bsfs:Feature rdfs:subClassOf bsfs:Array. + bsl:Array rdfs:subClassOf bsfs:Literal . + bsa:Feature rdfs:subClassOf bsl:Array. - bsfs:Colors rdfs:subClassOf bsfs:Feature ; + bsfs:Colors rdfs:subClassOf bsa:Feature ; bsfs:dimension "1234"^^xsd:integer ; rdfs:label "hello world"^^xsd:string ; bsfs:foo "1234"^^xsd:integer . @@ -748,10 +769,10 @@ class TestFromString(unittest.TestCase): p_group = p_tag.child(ns.bse.group, domain=n_image, unique=True) p_comment = p_annotation.child(ns.bse.comment, range=l_string) # features - f_colors = types.ROOT_FEATURE.child(URI('http://bsfs.ai/schema/Feature/colors_spatial'), - dtype=ns.bsfs.f16, distance=ns.bsfs.euclidean) - f_colors1234 = f_colors.child(URI('http://bsfs.ai/schema/Feature/colors_spatial#1234'), dimension=1024) - f_colors4321 = f_colors.child(URI('http://bsfs.ai/schema/Feature/colors_spatial#4321'), dimension=2048) + f_colors = types.ROOT_FEATURE.child(URI('https://schema.bsfs.io/core/Feature/colors_spatial'), + dtype=ns.bsfs.dtype().f16, distance=ns.bsfs.euclidean) + f_colors1234 = f_colors.child(URI('https://schema.bsfs.io/core/Feature/colors_spatial#1234'), dimension=1024) + f_colors4321 = f_colors.child(URI('https://schema.bsfs.io/core/Feature/colors_spatial#4321'), dimension=2048) # schema ref = Schema( {p_annotation, p_tag, p_group, p_comment}, @@ -764,8 +785,10 @@ class TestFromString(unittest.TestCase): prefix xsd: <http://www.w3.org/2001/XMLSchema#> # bsfs prefixes - prefix bsfs: <http://bsfs.ai/schema/> - prefix bse: <http://bsfs.ai/schema/Entity#> + prefix bsfs: <https://schema.bsfs.io/core/> + prefix bse: <https://schema.bsfs.io/core/Entity#> + prefix bsl: <https://schema.bsfs.io/core/Literal/> + prefix bsa: <https://schema.bsfs.io/core/Literal/Array/> # nodes bsfs:Entity rdfs:subClassOf bsfs:Node ; @@ -777,10 +800,10 @@ class TestFromString(unittest.TestCase): # literals xsd:string rdfs:subClassOf bsfs:Literal ; rdfs:label "A sequence of characters"^^xsd:string . - bsfs:Array rdfs:subClassOf bsfs:Literal . - bsfs:Feature rdfs:subClassOf bsfs:Array. - bsfs:Number rdfs:subClassOf bsfs:Literal . - xsd:integer rdfs:subClassOf bsfs:Number . + bsl:Array rdfs:subClassOf bsfs:Literal . + bsa:Feature rdfs:subClassOf bsl:Array. + bsl:Number rdfs:subClassOf bsfs:Literal . + xsd:integer rdfs:subClassOf bsl:Number . xsd:boolean rdfs:subClassOf bsfs:Literal . @@ -789,19 +812,19 @@ class TestFromString(unittest.TestCase): rdfs:label "node annotation"^^xsd:string . # feature instances - <http://bsfs.ai/schema/Feature/colors_spatial> rdfs:subClassOf bsfs:Feature ; - bsfs:dtype bsfs:f16 ; + <https://schema.bsfs.io/core/Feature/colors_spatial> rdfs:subClassOf bsa:Feature ; + bsfs:dtype <https://schema.bsfs.io/core/dtype#f16> ; bsfs:distance bsfs:euclidean ; # annotations rdfs:label "ColorsSpatial instances. Dimension depends on instance."^^xsd:string ; bsfs:first_arg "1234"^^xsd:integer ; bsfs:second_arg "hello world"^^xsd:string . - <http://bsfs.ai/schema/Feature/colors_spatial#1234> rdfs:subClassOf <http://bsfs.ai/schema/Feature/colors_spatial> ; + <https://schema.bsfs.io/core/Feature/colors_spatial#1234> rdfs:subClassOf <https://schema.bsfs.io/core/Feature/colors_spatial> ; bsfs:dimension "1024"^^xsd:integer ; rdfs:label "Main colors spatial instance"^^xsd:string . - <http://bsfs.ai/schema/Feature/colors_spatial#4321> rdfs:subClassOf <http://bsfs.ai/schema/Feature/colors_spatial> ; + <https://schema.bsfs.io/core/Feature/colors_spatial#4321> rdfs:subClassOf <https://schema.bsfs.io/core/Feature/colors_spatial> ; bsfs:dimension "2048"^^xsd:integer . # predicate instances @@ -829,19 +852,19 @@ class TestFromString(unittest.TestCase): self.assertDictEqual(gen.node(ns.bsfs.Tag).annotations, {ns.rdfs.label: 'Tag'}) self.assertDictEqual(gen.literal(ns.xsd.string).annotations, {ns.rdfs.label: 'A sequence of characters'}) self.assertDictEqual(gen.predicate(ns.bsfs.Annotation).annotations, {ns.rdfs.label: 'node annotation'}) - self.assertDictEqual(gen.literal(URI('http://bsfs.ai/schema/Feature/colors_spatial')).annotations, { + self.assertDictEqual(gen.literal(URI('https://schema.bsfs.io/core/Feature/colors_spatial')).annotations, { ns.rdfs.label: 'ColorsSpatial instances. Dimension depends on instance.', ns.bsfs.first_arg: 1234, ns.bsfs.second_arg: 'hello world', }) - self.assertDictEqual(gen.literal(URI('http://bsfs.ai/schema/Feature/colors_spatial#1234')).annotations, { + self.assertDictEqual(gen.literal(URI('https://schema.bsfs.io/core/Feature/colors_spatial#1234')).annotations, { ns.rdfs.label: 'Main colors spatial instance'}) self.assertDictEqual(gen.predicate(ns.bse.tag).annotations, {ns.rdfs.label: 'connect entity to a tag'}) # blank nodes result in an error self.assertRaises(errors.BackendError, from_string, ''' prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> - prefix bsfs: <http://bsfs.ai/schema/> + prefix bsfs: <https://schema.bsfs.io/core/> bsfs:Entity rdfs:subClassOf bsfs:Node ; bsfs:foo _:bar . ''') @@ -976,29 +999,29 @@ class TestToString(unittest.TestCase): def test_feature(self): # root features - f_colors = types.ROOT_FEATURE.child(URI('http://bsfs.ai/schema/Feature/colors'), + f_colors = types.ROOT_FEATURE.child(URI('https://schema.bsfs.io/core/Feature/colors'), distance=ns.bsfs.cosine) # derived features - f_colors1234 = f_colors.child(URI('http://bsfs.ai/schema/Feature/colors#1234'), + f_colors1234 = f_colors.child(URI('https://schema.bsfs.io/core/Feature/colors#1234'), dimension=1024) # inherits dtype, distance - f_colors4321 = f_colors.child(URI('http://bsfs.ai/schema/Feature/colors#4321'), + f_colors4321 = f_colors.child(URI('https://schema.bsfs.io/core/Feature/colors#4321'), dimension=2048, distance=ns.bsfs.euclidean) # inherits dtype # create schema schema = Schema(literals={f_colors, f_colors1234, f_colors4321}) schema_str = to_string(schema) # all symbols are serialized - self.assertIn('bsfs:Array', schema_str) - self.assertIn('<http://bsfs.ai/schema/Feature/colors', schema_str) - self.assertIn('<http://bsfs.ai/schema/Feature/colors#1234', schema_str) - self.assertIn('<http://bsfs.ai/schema/Feature/colors#4321', schema_str) + self.assertIn('bsl:Array', schema_str) + self.assertIn('<https://schema.bsfs.io/core/Feature/colors', schema_str) + self.assertIn('<https://schema.bsfs.io/core/Feature/colors#1234', schema_str) + self.assertIn('<https://schema.bsfs.io/core/Feature/colors#4321', schema_str) # inherited properties are not serialized - self.assertIsNotNone(re.search(r'<http://bsfs\.ai/schema/Feature/colors#1234>[^\.]*bsfs:dimension[^\.]', schema_str)) - self.assertIsNone(re.search(r'<http://bsfs\.ai/schema/Feature/colors#1234>[^\.]*bsfs:dtype[^\.]', schema_str)) - self.assertIsNone(re.search(r'<http://bsfs\.ai/schema/Feature/colors#1234>[^\.]*bsfs:distance[^\.]', schema_str)) - self.assertIsNotNone(re.search(r'<http://bsfs\.ai/schema/Feature/colors#4321>[^\.]*bsfs:dimension[^\.]', schema_str)) - self.assertIsNotNone(re.search(r'<http://bsfs\.ai/schema/Feature/colors#4321>[^\.]*bsfs:distance[^\.]', schema_str)) - self.assertIsNone(re.search(r'<http://bsfs\.ai/schema/Feature/colors#4321>[^\.]*bsfs:dtype[^\.]', schema_str)) + self.assertIsNotNone(re.search(r'<https://schema.bsfs\.io/core/Feature/colors#1234>.*[^\.]*bsfs:dimension[^\.]', schema_str)) + self.assertIsNone(re.search(r'<https://schema\.bsfs\.io/core/Feature/colors#1234>.*[^\.]*bsfs:dtype[^\.]', schema_str)) + self.assertIsNone(re.search(r'<https://schema\.bsfs\.io/core/Feature/colors#1234>.*[^\.]*bsfs:distance[^\.]', schema_str)) + self.assertIsNotNone(re.search(r'<https://schema\.bsfs\.io/core/Feature/colors#4321>.*[^\.]*bsfs:dimension[^\.]', schema_str)) + self.assertIsNotNone(re.search(r'<https://schema\.bsfs\.io/core/Feature/colors#4321>.*[^\.]*bsfs:distance[^\.]', schema_str)) + self.assertIsNone(re.search(r'<https://schema\.bsfs\.io/core/Feature/colors#4321>.*[^\.]*bsfs:dtype[^\.]', schema_str)) # unserialize yields the original schema self.assertEqual(schema, from_string(schema_str)) @@ -1009,12 +1032,12 @@ class TestToString(unittest.TestCase): ns.bsfs.foo: 1234, ns.bsfs.bar: False, } - f_colors = types.ROOT_FEATURE.child(URI('http://bsfs.ai/schema/Feature/colors'), - dtype=ns.bsfs.f16, distance=ns.bsfs.euclidean, + f_colors = types.ROOT_FEATURE.child(URI('https://schema.bsfs.io/core/Feature/colors'), + dtype=ns.bsfs.dtype().f16, distance=ns.bsfs.euclidean, **annotations) self.assertDictEqual( annotations, - from_string(to_string(Schema(literals={f_colors}))).literal(URI('http://bsfs.ai/schema/Feature/colors')).annotations) + from_string(to_string(Schema(literals={f_colors}))).literal(URI('https://schema.bsfs.io/core/Feature/colors')).annotations) ## main ## |