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-rw-r--r--bsie/tools/pipeline.py7
-rw-r--r--bsie/utils/bsfs.py2
-rw-r--r--bsie/utils/namespaces.py8
3 files changed, 11 insertions, 6 deletions
diff --git a/bsie/tools/pipeline.py b/bsie/tools/pipeline.py
index 52ce526..20e8ddf 100644
--- a/bsie/tools/pipeline.py
+++ b/bsie/tools/pipeline.py
@@ -18,6 +18,9 @@ __all__: typing.Sequence[str] = (
'Pipeline',
)
+# constants
+FILE_PREFIX = 'file#'
+
## code ##
logger = logging.getLogger(__name__)
@@ -48,7 +51,7 @@ class Pipeline():
ext2rdr: typing.Dict[base.extractor.Extractor, typing.Optional[base.reader.Reader]]
):
# store core members
- self._prefix = prefix
+ self._prefix = prefix + FILE_PREFIX
self._ext2rdr = ext2rdr
# compile schema from all extractors
self._schema = bsfs.schema.Schema.Union(ext.schema for ext in ext2rdr)
@@ -114,7 +117,7 @@ class Pipeline():
# create subject for file
uuid = bsfs.uuid.UCID.from_path(path)
- subject = node.Node(ns.bsfs.File, self._prefix + 'file#' + uuid)
+ subject = node.Node(ns.bsfs.File, self._prefix[uuid])
# extract information
for rdr, extrs in rdr2ext.items():
diff --git a/bsie/utils/bsfs.py b/bsie/utils/bsfs.py
index c48049d..0b88479 100644
--- a/bsie/utils/bsfs.py
+++ b/bsie/utils/bsfs.py
@@ -9,6 +9,7 @@ import typing
# bsfs imports
from bsfs import Open, schema
+from bsfs.apps.init import init_sparql_store
from bsfs.namespace import Namespace
from bsfs.utils import URI, typename, uuid
@@ -17,6 +18,7 @@ __all__: typing.Sequence[str] = (
'Namespace',
'Open',
'URI',
+ 'init_sparql_store',
'schema',
'typename',
'uuid',
diff --git a/bsie/utils/namespaces.py b/bsie/utils/namespaces.py
index d6e1c72..a29fc1b 100644
--- a/bsie/utils/namespaces.py
+++ b/bsie/utils/namespaces.py
@@ -11,10 +11,10 @@ import typing
from . import bsfs as _bsfs
# constants
-bse = _bsfs.Namespace('http://bsfs.ai/schema/Entity#')
-bsfs = _bsfs.Namespace('http://bsfs.ai/schema/')
-bsm = _bsfs.Namespace('http://bsfs.ai/schema/Meta#')
-xsd = _bsfs.Namespace('http://www.w3.org/2001/XMLSchema#')
+bse = _bsfs.Namespace('http://bsfs.ai/schema/Entity')
+bsfs = _bsfs.Namespace('http://bsfs.ai/schema', fsep='/')
+bsm = _bsfs.Namespace('http://bsfs.ai/schema/Meta')
+xsd = _bsfs.Namespace('http://www.w3.org/2001/XMLSchema')
# export
__all__: typing.Sequence[str] = (